Detailed information of SNP:
|
SNP ID:
sf0404925129(Gbrowse)
Chromosome: chr04 Position: 4925129 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 71.26% | 28.74% |
| All Indica | 791 | 93.81% | 6.19% |
| All Japonica | 495 | 32.53% | 67.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 334 | 21.56% | 78.44% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404925129 | A->G | LOC_Os04g09270(LOC_Os04g09270.1) | INTRON |