Detailed information of SNP:
|
SNP ID:
sf0404927989(Gbrowse)
Chromosome: chr04 Position: 4927989 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 73.56% | 26.44% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 485 | 34.43% | 65.57% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 327 | 23.55% | 76.45% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404927989 | T->C | LOC_Os04g09284(LOC_Os04g09284.1) | Non-Synonymous SNP |