Detailed information of SNP:
|
SNP ID:
sf0404940407(Gbrowse)
Chromosome: chr04 Position: 4940407 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 62.73% | 37.27% |
| All Indica | 791 | 87.23% | 12.77% |
| All Japonica | 485 | 18.56% | 81.44% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 86.83% | 13.17% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 330 | 11.21% | 88.79% |
| Tropical Japonica | 90 | 33.33% | 66.67% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404940407 | T->C | LOC_Os04g09310(LOC_Os04g09310.1) | INTRON |