Detailed information of SNP:
|
SNP ID:
sf0404959322(Gbrowse)
Chromosome: chr04 Position: 4959322 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 92.27% | 7.73% |
| All Indica | 743 | 88.02% | 11.98% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 362 | 90.61% | 9.39% |
| Indica II | 188 | 81.91% | 18.09% |
| Indica Intermediate | 193 | 89.12% | 10.88% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404959322 | G->A | INTERGENIC | None |