Detailed information of SNP:
|
SNP ID:
sf0404963969(Gbrowse)
Chromosome: chr04 Position: 4963969 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 60.28% | 39.72% |
| All Indica | 750 | 41.20% | 58.80% |
| All Japonica | 488 | 92.83% | 7.17% |
| Aus | 64 | 21.88% | 78.12% |
| Indica I | 344 | 48.26% | 51.74% |
| Indica II | 208 | 40.87% | 59.13% |
| Indica Intermediate | 198 | 29.29% | 70.71% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404963969 | C->G | LOC_Os04g09350(LOC_Os04g09350.3) | INTRON |
| sf0404963969 | C->G | LOC_Os04g09350(LOC_Os04g09350.4) | INTRON |