Detailed information of SNP:
|
SNP ID:
sf0404974157(Gbrowse)
Chromosome: chr04 Position: 4974157 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1321 | 53.29% | 46.71% |
| All Indica | 737 | 32.29% | 67.71% |
| All Japonica | 471 | 90.02% | 9.98% |
| Aus | 63 | 15.87% | 84.13% |
| Indica I | 352 | 32.39% | 67.61% |
| Indica II | 191 | 31.94% | 68.06% |
| Indica Intermediate | 194 | 32.47% | 67.53% |
| Temperate Japonica | 318 | 93.08% | 6.92% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 61 | 75.41% | 24.59% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404974157 | A->G | LOC_Os04g09360(LOC_Os04g09360.1) | Non-Synonymous SNP |