Detailed information of SNP:
|
SNP ID:
sf0404981214(Gbrowse)
Chromosome: chr04 Position: 4981214 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 60.43% | 39.57% |
| All Indica | 779 | 77.92% | 22.08% |
| All Japonica | 493 | 29.61% | 70.39% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 365 | 83.56% | 16.44% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 202 | 68.32% | 31.68% |
| Temperate Japonica | 332 | 19.28% | 80.72% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0404981214 | C->T | LOC_Os04g09370(LOC_Os04g09370.1) | Non-Synonymous SNP |