Detailed information of SNP:
|
SNP ID:
sf0405011049(Gbrowse)
Chromosome: chr04 Position: 5011049 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 66.33% | 33.67% |
| All Indica | 780 | 92.05% | 7.95% |
| All Japonica | 487 | 20.94% | 79.06% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 198 | 89.39% | 10.61% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 85 | 37.65% | 62.35% |
| Japonica Intermediate | 67 | 62.69% | 37.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405011049 | A->G | INTERGENIC | None |