Detailed information of SNP:
|
SNP ID:
sf0405031245(Gbrowse)
Chromosome: chr04 Position: 5031245 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.29% | 43.71% |
| All Indica | 796 | 85.05% | 14.95% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405031245 | G->A | INTERGENIC | None |