Detailed information of SNP:
|
SNP ID:
sf0405031543(Gbrowse)
Chromosome: chr04 Position: 5031543 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.66% | 30.34% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 495 | 23.84% | 76.16% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405031543 | T->C | INTERGENIC | None |