Detailed information of SNP:
|
SNP ID:
sf0405041534(Gbrowse)
Chromosome: chr04 Position: 5041534 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 63.24% | 36.76% |
| All Indica | 793 | 49.18% | 50.82% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 372 | 39.78% | 60.22% |
| Indica II | 211 | 42.65% | 57.35% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405041534 | G->T | INTERGENIC | None |