Detailed information of SNP:
|
SNP ID:
sf0405047452(Gbrowse)
Chromosome: chr04 Position: 5047452 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 62.90% | 37.10% |
| All Indica | 790 | 96.46% | 3.54% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405047452 | A->G | INTERGENIC | None |