Detailed information of SNP:
|
SNP ID:
sf0405054276(Gbrowse)
Chromosome: chr04 Position: 5054276 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 62.36% | 37.64% |
| All Indica | 784 | 95.66% | 4.34% |
| All Japonica | 494 | 4.86% | 95.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 200 | 97.00% | 3.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405054276 | T->A | INTERGENIC | None |