Detailed information of SNP:
|
SNP ID:
sf0405061676(Gbrowse)
Chromosome: chr04 Position: 5061676 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.40% | 25.60% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 34.21% | 65.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405061676 | A->G | LOC_Os04g09460(LOC_Os04g09460.1) | INTRON |