Detailed information of SNP:
SNP ID:
sf0405062954(Gbrowse)
Chromosome: chr04 Position: 5062954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 94.08% | 5.92% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 496 | 83.87% | 16.13% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 334 | 92.22% | 7.78% |
Tropical Japonica | 94 | 86.17% | 13.83% |
Japonica Intermediate | 68 | 39.71% | 60.29% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0405062954 | C->T | LOC_Os04g09460(LOC_Os04g09460.1) | Non-Synonymous SNP |