Detailed information of SNP:
|
SNP ID:
sf0405068434(Gbrowse)
Chromosome: chr04 Position: 5068434 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 61.48% | 38.52% |
| All Indica | 792 | 93.69% | 6.31% |
| All Japonica | 495 | 5.25% | 94.75% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405068434 | G->T | LOC_Os04g09470(LOC_Os04g09470.1) | Non-Synonymous SNP |