Detailed information of SNP:
|
SNP ID:
sf0405085412(Gbrowse)
Chromosome: chr04 Position: 5085412 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 93.76% | 6.24% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 443 | 81.49% | 18.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 73.63% | 26.37% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405085412 | G->A | INTERGENIC | None |