Detailed information of SNP:
|
SNP ID:
sf0405112198(Gbrowse)
Chromosome: chr04 Position: 5112198 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 83.67% | 16.33% |
| All Indica | 795 | 94.72% | 5.28% |
| All Japonica | 497 | 63.18% | 36.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405112198 | A->G | INTERGENIC | None |