Detailed information of SNP:
|
SNP ID:
sf0405112382(Gbrowse)
Chromosome: chr04 Position: 5112382 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1371 | 82.71% | 17.29% |
| All Indica | 752 | 94.28% | 5.72% |
| All Japonica | 496 | 62.50% | 37.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 93.61% | 6.39% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 180 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405112382 | A->G | INTERGENIC | None |