Detailed information of SNP:
|
SNP ID:
sf0405133337(Gbrowse)
Chromosome: chr04 Position: 5133337 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 56.31% | 43.69% |
| All Indica | 765 | 64.31% | 35.69% |
| All Japonica | 493 | 38.95% | 61.05% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 359 | 68.25% | 31.75% |
| Indica II | 201 | 66.17% | 33.83% |
| Indica Intermediate | 205 | 55.61% | 44.39% |
| Temperate Japonica | 335 | 36.72% | 63.28% |
| Tropical Japonica | 90 | 17.78% | 82.22% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405133337 | G->A | LOC_Os04g09580(LOC_Os04g09580.1) | UTR_3_PRIME |