Detailed information of SNP:
|
SNP ID:
sf0405134141(Gbrowse)
Chromosome: chr04 Position: 5134141 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.51% | 32.49% |
| All Indica | 799 | 68.21% | 31.79% |
| All Japonica | 497 | 61.37% | 38.63% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 50.45% | 49.55% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405134141 | C->T | LOC_Os04g09580(LOC_Os04g09580.1) | UTR_3_PRIME |