Detailed information of SNP:
|
SNP ID:
sf0405147118(Gbrowse)
Chromosome: chr04 Position: 5147118 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 68.02% | 31.98% |
| All Indica | 784 | 63.39% | 36.61% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 75.34% | 24.66% |
| Indica II | 211 | 47.39% | 52.61% |
| Indica Intermediate | 200 | 58.00% | 42.00% |
| Temperate Japonica | 335 | 62.39% | 37.61% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405147118 | T->A | INTERGENIC | None |