Detailed information of SNP:
|
SNP ID:
sf0405147847(Gbrowse)
Chromosome: chr04 Position: 5147847 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.64% | 38.36% |
| All Indica | 798 | 53.51% | 46.49% |
| All Japonica | 497 | 69.62% | 30.38% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405147847 | C->T | LOC_Os04g09590(LOC_Os04g09590.1) | Non-Synonymous SNP |