Detailed information of SNP:
|
SNP ID:
sf0405175726(Gbrowse)
Chromosome: chr04 Position: 5175726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.20% | 26.80% |
| All Indica | 798 | 57.14% | 42.86% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405175726 | G->A | LOC_Os04g09654(LOC_Os04g09654.2) | Synonymous |
| sf0405175726 | G->A | LOC_Os04g09654(LOC_Os04g09654.1) | Synonymous |