Detailed information of SNP:
|
SNP ID:
sf0405176163(Gbrowse)
Chromosome: chr04 Position: 5176163 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 80.45% | 19.55% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 497 | 51.31% | 48.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405176163 | T->C | LOC_Os04g09654(LOC_Os04g09654.2) | INTRON |
| sf0405176163 | T->C | LOC_Os04g09654(LOC_Os04g09654.1) | INTRON |