Detailed information of SNP:
|
SNP ID:
sf0405195827(Gbrowse)
Chromosome: chr04 Position: 5195827 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 97.52% | 2.48% |
| All Indica | 794 | 97.73% | 2.27% |
| All Japonica | 492 | 96.54% | 3.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405195827 | C->T | LOC_Os04g09700(LOC_Os04g09700.1) | Non-Synonymous SNP |