Detailed information of SNP:
|
SNP ID:
sf0405205072(Gbrowse)
Chromosome: chr04 Position: 5205072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 94.96% | 5.04% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 490 | 90.00% | 10.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 91 | 61.54% | 38.46% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405205072 | A->G | LOC_Os04g09720(LOC_Os04g09720.1) | INTRON |