Detailed information of SNP:
|
SNP ID:
sf0405213625(Gbrowse)
Chromosome: chr04 Position: 5213625 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.82% | 38.18% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 497 | 11.47% | 88.53% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405213625 | A->G | INTERGENIC | None |