Detailed information of SNP:
|
SNP ID:
sf0405219460(Gbrowse)
Chromosome: chr04 Position: 5219460 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 88.74% | 11.26% |
| All Indica | 765 | 84.44% | 15.56% |
| All Japonica | 492 | 93.29% | 6.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 83.00% | 17.00% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 203 | 80.30% | 19.70% |
| Temperate Japonica | 332 | 91.57% | 8.43% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405219460 | G->A | INTERGENIC | None |