Detailed information of SNP:
|
SNP ID:
sf0405222869(Gbrowse)
Chromosome: chr04 Position: 5222869 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 96.86% | 3.14% |
| All Indica | 793 | 96.97% | 3.03% |
| All Japonica | 457 | 96.72% | 3.28% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 97.83% | 2.17% |
| Tropical Japonica | 74 | 90.54% | 9.46% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405222869 | G->A | LOC_Os04g09750(LOC_Os04g09750.1) | INTRON |