Detailed information of SNP:
|
SNP ID:
sf0405226624(Gbrowse)
Chromosome: chr04 Position: 5226624 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 94.54% | 5.46% |
| All Indica | 750 | 92.67% | 7.33% |
| All Japonica | 488 | 97.95% | 2.05% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 356 | 93.26% | 6.74% |
| Indica II | 198 | 91.92% | 8.08% |
| Indica Intermediate | 196 | 92.35% | 7.65% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405226624 | A->G | INTERGENIC | None |