Detailed information of SNP:
SNP ID:
sf0405239497(Gbrowse)
Chromosome: chr04 Position: 5239497 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 89.92% | 10.08% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 496 | 71.98% | 28.02% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 334 | 59.88% | 40.12% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0405239497 | T->C | INTERGENIC | None |