Detailed information of SNP:



SNP ID: sf0405239497(Gbrowse)

Chromosome: chr04

Position: 5239497
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 89.92% 10.08%
All Indica799 99.75% 0.25%
All Japonica496 71.98% 28.02%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 59.88% 40.12%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405239497 T->C INTERGENIC None