Detailed information of SNP:
|
SNP ID:
sf0405239883(Gbrowse)
Chromosome: chr04 Position: 5239883 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 70.82% | 29.18% |
| All Indica | 799 | 80.23% | 19.77% |
| All Japonica | 497 | 61.97% | 38.03% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 45.97% | 54.03% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405239883 | T->C | INTERGENIC | None |