Detailed information of SNP:
|
SNP ID:
sf0405246917(Gbrowse)
Chromosome: chr04 Position: 5246917 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.09% | 34.91% |
| All Indica | 798 | 60.15% | 39.85% |
| All Japonica | 497 | 66.60% | 33.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 38.13% | 61.87% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405246917 | A->G | INTERGENIC | None |