Detailed information of SNP:
|
SNP ID:
sf0405251733(Gbrowse)
Chromosome: chr04 Position: 5251733 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 86.22% | 13.78% |
| All Indica | 795 | 84.03% | 15.97% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 53.59% | 46.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405251733 | G->A | LOC_Os04g09800(LOC_Os04g09800.1) | Synonymous |