Detailed information of SNP:
|
SNP ID:
sf0405263756(Gbrowse)
Chromosome: chr04 Position: 5263756 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.69% | 42.31% |
| All Indica | 798 | 56.27% | 43.73% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 64.17% | 35.83% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 45.37% | 54.63% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405263756 | T->C | INTERGENIC | None |