Detailed information of SNP:
|
SNP ID:
sf0405265717(Gbrowse)
Chromosome: chr04 Position: 5265717 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 85.89% | 14.11% |
| All Indica | 797 | 84.19% | 15.81% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405265717 | C->T | INTERGENIC | None |