Detailed information of SNP:
|
SNP ID:
sf0405266784(Gbrowse)
Chromosome: chr04 Position: 5266784 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 52.59% | 47.41% |
| All Indica | 793 | 46.15% | 53.85% |
| All Japonica | 496 | 67.34% | 32.66% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 374 | 39.57% | 60.43% |
| Indica II | 211 | 41.71% | 58.29% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405266784 | T->C | INTERGENIC | None |