Detailed information of SNP:
|
SNP ID:
sf0405267275(Gbrowse)
Chromosome: chr04 Position: 5267275 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.00% | 42.00% |
| All Indica | 799 | 61.33% | 38.67% |
| All Japonica | 497 | 46.08% | 53.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 55.52% | 44.48% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405267275 | T->C | INTERGENIC | None |