Detailed information of SNP:
|
SNP ID:
sf0405294362(Gbrowse)
Chromosome: chr04 Position: 5294362 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.28% | 46.72% |
| All Indica | 797 | 46.30% | 53.70% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 38.93% | 61.07% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 57.31% | 42.69% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405294362 | G->A | LOC_Os04g09860(LOC_Os04g09860.2) | INTRON |
| sf0405294362 | G->A | LOC_Os04g09860(LOC_Os04g09860.3) | INTRON |
| sf0405294362 | G->A | LOC_Os04g09860(LOC_Os04g09860.1) | INTRON |