Detailed information of SNP:
|
SNP ID:
sf0405297511(Gbrowse)
Chromosome: chr04 Position: 5297511 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.01% | 26.99% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 36.62% | 63.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 42.69% | 57.31% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405297511 | C->A | LOC_Os04g09860(LOC_Os04g09860.2) | INTRON |
| sf0405297511 | C->A | LOC_Os04g09860(LOC_Os04g09860.3) | INTRON |
| sf0405297511 | C->A | LOC_Os04g09860(LOC_Os04g09860.1) | INTRON |