Detailed information of SNP:
|
SNP ID:
sf0405305245(Gbrowse)
Chromosome: chr04 Position: 5305245 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.53% | 49.47% |
| All Indica | 799 | 47.43% | 52.57% |
| All Japonica | 497 | 63.58% | 36.42% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405305245 | G->A | INTERGENIC | None |