Detailed information of SNP:



SNP ID: sf0405305245(Gbrowse)

Chromosome: chr04

Position: 5305245
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 50.53% 49.47%
All Indica799 47.43% 52.57%
All Japonica497 63.58% 36.42%
Aus67 0.00% 100.00%
Indica I375 61.60% 38.40%
Indica II213 33.80% 66.20%
Indica Intermediate211 36.02% 63.98%
Temperate Japonica335 57.91% 42.09%
Tropical Japonica94 60.64% 39.36%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405305245 G->A INTERGENIC None