Detailed information of SNP:
|
SNP ID:
sf0405318015(Gbrowse)
Chromosome: chr04 Position: 5318015 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1291 | 62.66% | 37.34% |
| All Indica | 717 | 96.79% | 3.21% |
| All Japonica | 491 | 11.00% | 89.00% |
| Aus | 36 | 97.22% | 2.78% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 152 | 95.39% | 4.61% |
| Indica Intermediate | 190 | 96.84% | 3.16% |
| Temperate Japonica | 332 | 9.94% | 90.06% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 66 | 0.00% | 100.00% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 37 | 43.24% | 56.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405318015 | A->G | LOC_Os04g09900(LOC_Os04g09900.2) | INTRON |
| sf0405318015 | A->G | LOC_Os04g09900(LOC_Os04g09900.3) | INTRON |
| sf0405318015 | A->G | LOC_Os04g09900(LOC_Os04g09900.1) | INTRON |