Detailed information of SNP:
|
SNP ID:
sf0405353543(Gbrowse)
Chromosome: chr04 Position: 5353543 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.69% | 37.31% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405353543 | A->T | INTERGENIC | None |