Detailed information of SNP:
|
SNP ID:
sf0405355544(Gbrowse)
Chromosome: chr04 Position: 5355544 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.40% | 37.60% |
| All Indica | 796 | 92.09% | 7.91% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405355544 | C->T | INTERGENIC | None |