Detailed information of SNP:
|
SNP ID:
sf0405355572(Gbrowse)
Chromosome: chr04 Position: 5355572 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 62.18% | 37.82% |
| All Indica | 794 | 91.81% | 8.19% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405355572 | A->G | INTERGENIC | None |