Detailed information of SNP:
|
SNP ID:
sf0405359889(Gbrowse)
Chromosome: chr04 Position: 5359889 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 70.51% | 29.49% |
| All Indica | 789 | 92.65% | 7.35% |
| All Japonica | 458 | 27.73% | 72.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 205 | 93.66% | 6.34% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 299 | 30.43% | 69.57% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405359889 | C->T | INTERGENIC | None |