Detailed information of SNP:
|
SNP ID:
sf0405370482(Gbrowse)
Chromosome: chr04 Position: 5370482 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 68.31% | 31.69% |
| All Indica | 789 | 92.52% | 7.48% |
| All Japonica | 464 | 22.63% | 77.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 205 | 93.66% | 6.34% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 305 | 30.82% | 69.18% |
| Tropical Japonica | 91 | 8.79% | 91.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405370482 | A->G | INTERGENIC | None |