Detailed information of SNP:
|
SNP ID:
sf0405383259(Gbrowse)
Chromosome: chr04 Position: 5383259 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 94.16% | 5.84% |
| All Indica | 790 | 99.62% | 0.38% |
| All Japonica | 441 | 83.22% | 16.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 205 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 77.59% | 22.41% |
| Tropical Japonica | 82 | 98.78% | 1.22% |
| Japonica Intermediate | 60 | 90.00% | 10.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405383259 | C->T | INTERGENIC | None |