Detailed information of SNP:
|
SNP ID:
sf0405383272(Gbrowse)
Chromosome: chr04 Position: 5383272 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 53.11% | 46.89% |
| All Indica | 799 | 24.78% | 75.22% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 46.88% | 53.12% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405383272 | C->T | INTERGENIC | None |